STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO49341.1KEGG: kva:Kvar_1857 hypothetical protein. (410 aa)    
Predicted Functional Partners:
ADO49342.1
PFAM: Heparinase II/III family protein; KEGG: ypy:YPK_3711 heparinase II/III family protein.
 
  
  0.913
ADO49340.1
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01039 hexuronate transporter.
 
     0.784
ADO49343.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: enc:ECL_04168 hypothetical protein.
 
    0.718
ADO47040.1
PFAM: glycosyl hydrolase family 88; KEGG: enc:ECL_04348 glycosyl hydrolase family protein.
     0.407
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.