Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO49342.1PFAM: Heparinase II/III family protein; KEGG: ypy:YPK_3711 heparinase II/III family protein. (644 aa)    
Predicted Functional Partners:
ADO49341.1
KEGG: kva:Kvar_1857 hypothetical protein.
 
  
  0.913
ADO49343.1
PFAM: Cupin 2 conserved barrel domain protein; KEGG: enc:ECL_04168 hypothetical protein.
 
   
 0.884
ADO49340.1
PFAM: major facilitator superfamily MFS_1; KEGG: ccs:CCNA_01039 hexuronate transporter.
 
    0.829
ADO48127.1
PFAM: minor tail U; KEGG: enc:ECL_01706 minor tail protein U.
  
   0.780
ADO49244.1
PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_02296 hypothetical protein.
 
    0.575
ADO46289.1
KEGG: enc:ECL_00012 D-galactonate transporter; TIGRFAM: d-galactonate transporter; phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1.
 
    0.548
ADO46880.1
D-galactonate transporter; KEGG: esa:ESA_03504 hypothetical protein; TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1.
 
    0.494
ADO48137.1
PFAM: protein of unknown function DUF1983; Fibronectin type III domain protein; KEGG: ent:Ent638_2219 fibronectin, type III domain-containing protein.
  
 
 0.442
ADO48131.1
KEGG: enc:ECL_01710 GP16; TIGRFAM: phage tail tape measure protein, lambda family; PFAM: Prophage tail length tape measure.
  
 
 0.430
ADO48136.1
PFAM: lambda tail assembly I; KEGG: eta:ETA_24210 putative phage tail assembly protein.
  
   0.410
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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