Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO49470.1KEGG: enc:ECL_03156 hypothetical protein. (122 aa)    
Predicted Functional Partners:
ADO49469.1
PFAM: regulatory protein TetR; KEGG: kpu:KP1_1490 putative regulatory protein.
       0.835
ADO50347.1
KEGG: enc:ECL_00315 hypothetical protein.
  
     0.773
ADO49467.1
KEGG: kva:Kvar_3818 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
       0.595
ADO49468.1
KEGG: cko:CKO_02592 hypothetical protein.
       0.547
ADO49471.1
KEGG: cko:CKO_02596 dihydropteridine reductase; PFAM: nitroreductase.
     
 0.532
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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