Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO49724.1KEGG: enc:ECL_01069 fermentation/respiration switch protein; Belongs to the UPF0255 family. (414 aa)    
Predicted Functional Partners:
crl
Transcriptional regulator Crl; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.810
ADO50510.1
PFAM: protein of unknown function DUF1422; KEGG: cko:CKO_03028 hypothetical protein.
  
     0.772
ADO49364.1
PFAM: Protein of unknown function DUF2517; KEGG: ent:Ent638_1211 putative periplasmic protein.
  
     0.762
ADO50624.1
PFAM: protein of unknown function DUF1040; KEGG: enc:ECL_05123 hypothetical protein.
  
     0.762
ADO47696.1
PFAM: YfbU family protein; KEGG: kpu:KP1_3931 hypothetical protein; Belongs to the UPF0304 family.
  
     0.739
ADO48766.1
PFAM: Protein of unknown function DUF2498; KEGG: kva:Kvar_3045 protein of unknown function DUF2498.
  
     0.739
ADO47651.1
PFAM: Conserved hypothetical protein CHP00743; KEGG: kva:Kvar_1324 hypothetical protein.
  
     0.723
ADO49773.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ent:Ent638_0743 hypothetical protein.
  
     0.722
ADO47072.1
KEGG: cko:CKO_04333 hypothetical protein.
  
     0.720
ADO50184.1
PFAM: protein of unknown function DUF1107; KEGG: enc:ECL_00614 hypothetical protein.
  
     0.713
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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