STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO49741.1Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family; KEGG: regulatory protein IbgR; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein. (644 aa)    
Predicted Functional Partners:
ADO46772.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.807
ADO50265.1
Sigma 54 interacting domain protein; KEGG: pct:PC1_3954 PTS system transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; PTS system fructose subfamily IIA component; SMART: AAA ATPase.
  
     0.751
ADO49702.1
TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: cko:CKO_01212 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase.
    
 
 0.590
ADO49750.1
TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: ecv:APECO1_2103 dihydroxyacetone kinase subunit DhaK; PFAM: Dak kinase.
    
 
 0.590
ADO50492.1
KEGG: oan:Oant_4368 glycerone kinase; PFAM: Dak kinase.
    
 
 0.590
ADO49701.1
KEGG: kpu:KP1_4793 dihydroxyacetone kinase subunit DhaL; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase.
    
 
 0.579
ADO49751.1
KEGG: ecm:EcSMS35_4857 dihydroxyacetone kinase subunit DhaL; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase.
    
 
 0.579
ADO50491.1
PFAM: Dak phosphatase; KEGG: oan:Oant_4367 Dak phosphatase.
    
 
 0.579
ADO50050.1
KEGG: cko:CKO_05134 hypothetical protein; PFAM: sigma-54 factor interaction domain-containing protein; PRD domain protein; SMART: AAA ATPase.
  
     0.566
ADO49739.1
Na+/H+ antiporter NhaC; KEGG: ecv:APECO1_2092 putative transporter IbeT; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like.
  
    0.456
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.