Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ADO49757.1KEGG: she:Shewmr4_2744 hypothetical protein. (341 aa)    
Predicted Functional Partners:
ADO49758.1
PFAM: Ion transport 2 domain protein; KEGG: shn:Shewana3_2914 ion transport 2 domain-containing protein.
       0.831
ADO49755.1
KEGG: shm:Shewmr7_2820 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
       0.796
ADO49754.1
PFAM: protein of unknown function UPF0118; KEGG: kva:Kvar_4154 hypothetical protein.
     
 0.790
ADO49756.1
PFAM: secretion protein HlyD family protein; KEGG: shn:Shewana3_2912 secretion protein HlyD family protein.
       0.779
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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