Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADO50027.1PFAM: Malate/L-lactate dehydrogenase; KEGG: kva:Kvar_4453 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (339 aa)    
Predicted Functional Partners:
ADO50029.1
PFAM: Aldehyde Dehydrogenase; KEGG: cro:ROD_25491 putative aldehyde dehydrogenase.
 
     0.858
ADO50030.1
PFAM: dihydrodipicolinate synthetase; KEGG: cro:ROD_25481 putative dihydrodipicolinate synthetase; Belongs to the DapA family.
 
   
 0.817
ADO50028.1
PFAM: amino acid permease-associated region; KEGG: cro:ROD_25501 putative amino acid permease.
  
    0.757
ADO50032.1
4-hydroxyproline epimerase; KEGG: cro:ROD_25441 putative hydroxyproline-2-epimerase; PFAM: proline racemase; Belongs to the proline racemase family.
 
   
 0.683
ADO47610.1
KEGG: kva:Kvar_1300 bile acid:sodium symporter.
   
    0.679
ADO50031.1
KEGG: kva:Kvar_4457 transcriptional regulator, AraC family; PFAM: PAS fold-4 domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain.
 
     0.518
ADO50035.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: kva:Kvar_4461 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
     0.505
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.476
ADO50034.1
KEGG: cro:ROD_25421 hypothetical protein.
 
     0.469
ADO50033.1
PFAM: FAD dependent oxidoreductase; KEGG: kva:Kvar_4459 FAD dependent oxidoreductase.
 
   
 0.456
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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