Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADO50114.1TIGRFAM: DGQHR domain protein; KEGG: eoh:ECO103_5065 hypothetical protein. (375 aa)    
Predicted Functional Partners:
ADO50115.1
KEGG: eoh:ECO103_5064 hypothetical protein.
 
     0.949
ADO50111.1
Helicase domain protein; KEGG: cps:CPS_2941 putative DEAD/DEAH box helicase; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
  
     0.766
ADO50116.1
KEGG: eoh:ECO103_5063 hypothetical protein.
       0.659
ADO47213.1
TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; KEGG: kpu:KP1_4390 putative 6-pyruvoyl tetrahydrobiopterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein.
 
     0.428
ADO50105.1
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: eoh:ECO103_5074 putative 6-pyruvoyl tetrahydrobiopterin synthase.
 
     0.428
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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