Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADO50371.1PFAM: protein of unknown function DUF1017; KEGG: ecx:EcHS_A4267 hypothetical protein. (246 aa)    
Predicted Functional Partners:
ADO50370.1
PFAM: protein of unknown function DUF940 membrane lipoprotein; KEGG: enc:ECL_00281 putative lipoprotein.
  
 0.988
ADO50372.1
KEGG: cro:ROD_37231 putative lipoprotein.
 
  
 0.979
ADO50373.1
KEGG: sdy:SDY_4222 hypothetical protein.
  
  
 0.937
ycgR
YcgR family protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.727
ADO48171.1
PFAM: flagellar FlhE family protein; KEGG: set:SEN1091 flagellar protein FlhE precursor.
  
     0.717
ADO50666.1
KEGG: ses:SARI_03800 hypothetical protein.
  
     0.713
ADO47905.1
KEGG: cro:ROD_21811 putative colanic acid biosynthesis pyruvyl transferase.
  
     0.707
ADO48969.1
Anti-sigma-28 factor, FlgM; KEGG: cro:ROD_11381 negative regulator of flagellin synthesis (anti-sigma factor); TIGRFAM: Anti-sigma-28 factor FlgM family protein; PFAM: Anti-sigma-28 factor FlgM family protein.
  
     0.667
ADO47893.1
PFAM: glycosyl transferase group 1; KEGG: enc:ECL_03380 putative glycosyl transferase.
  
    0.643
mzrA
Hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.641
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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