Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADO50546.1Hypothetical protein; KEGG: pay:PAU_00452 otthump00000017444 (fragment). (124 aa)    
Predicted Functional Partners:
ADO50547.1
Hypothetical protein; Manually curated; KEGG: pay:PAU_00451 hemolysin/hemagglutinin-like protein HecA precursor.
       0.773
ADO50548.1
KEGG: ddc:Dd586_3961 hypothetical protein.
       0.671
ADO50549.1
KEGG: vap:Vapar_2290 YD repeat protein.
       0.671
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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