STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
rhaTL-rhamnose-proton symporter, RhaT family, DMT superfamily; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family. (344 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.715
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.648
rhaR
Transcriptional regulator, AraC family; Activates expression of the rhaSR operon in response to L- rhamnose.
 
  
 0.642
rhaA
TIGRFAM: L-rhamnose isomerase; KEGG: kva:Kvar_5006 L-rhamnose isomerase; PFAM: L-rhamnose isomerase.
 
  
 0.638
ADO49316.1
ABC transporter related protein; KEGG: kpu:KP1_1718 putative molybdenum transport ATP-binding protein ModF; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.534
rhaS
Transcriptional regulator, AraC family; Activates expression of the rhaBAD and rhaT operons.
 
   
 0.533
tsgA
PFAM: major facilitator superfamily MFS_1; KEGG: enc:ECL_04740 putative MFS transporter.
  
     0.527
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
  
 0.510
ADO46555.1
PFAM: Protein of unknown function DUF2500; KEGG: kva:Kvar_0268 protein of unknown function DUF2500.
  
     0.489
ADO48799.1
PFAM: SmpA/OmlA domain-containing protein; KEGG: ent:Ent638_1705 DNA-binding transcriptional activator OsmE.
  
     0.485
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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