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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (488 aa)    
Predicted Functional Partners:
rhaA
TIGRFAM: L-rhamnose isomerase; KEGG: kva:Kvar_5006 L-rhamnose isomerase; PFAM: L-rhamnose isomerase.
 
 
 0.998
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
 
 0.992
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.940
ADO46437.1
PFAM: Carbohydrate kinase, FGGY-like; KEGG: cko:CKO_05037 hypothetical protein.
  
  
 
0.907
fucI
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
  
 0.771
rhaR
Transcriptional regulator, AraC family; Activates expression of the rhaSR operon in response to L- rhamnose.
 
  
 0.739
rhaT
L-rhamnose-proton symporter, RhaT family, DMT superfamily; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
 
  
 0.627
rhaS
Transcriptional regulator, AraC family; Activates expression of the rhaBAD and rhaT operons.
 
  
 0.604
ADO49624.1
PFAM: RbsD or FucU transport; KEGG: etr:ETAE_0288 fucose dissimilation pathway protein FucU.
 
  
 0.578
ADO49337.1
PTS system, fructose subfamily, IIC subunit; KEGG: cko:CKO_02414 PTS system 2-O-A-mannosyl-D-glycerate specific transporter subunit IIABC; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC.
     
 0.422
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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