STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PECL_33Hypothetical protein. (675 aa)    
Predicted Functional Partners:
PECL_35
PTS system, sorbose-specific IIC component family.
 
     0.941
PECL_36
PTS system, mannose/fructose/sorbose IID component family protein.
 
     0.924
PECL_34
PTS system sorbose subIIB component family protein.
 
     0.884
PECL_32
PTS system fructose IIA component family protein.
 
     0.843
agaS
Sugar isomerase domain protein AgaS.
 
     0.791
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
  
     0.673
asp3
Accessory Sec system protein Asp3.
  
     0.534
PECL_31
Metallo-beta-lactamase superfamily protein; Belongs to the UPF0173 family.
       0.466
Your Current Organism:
Pediococcus claussenii
NCBI taxonomy Id: 701521
Other names: P. claussenii ATCC BAA-344, Pediococcus claussenii ATCC BAA-344, Pediococcus claussenii ATCC str. BAA-344, Pediococcus claussenii ATCC strain BAA-344
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.