STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PECL_676endonuclease/Exonuclease/phosphatase family protein. (358 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase SufS; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.841
PECL_1667
PTS system, glucose subfamily, IIABC protein.
  
  
 0.614
PECL_1671
PTS system, trehalose-specific IIABC component.
  
  
 0.614
treB
PTS system, trehalose-specific IIABC component.
  
  
 0.614
nagE
PTS system, N-acetylglucosamine-specific IIBC component.
  
  
 0.614
PECL_678
ABC transporter family protein.
 
     0.605
mprF-2
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
  
 0.578
PECL_677
Transcriptional regulator, GntR family.
       0.541
PECL_679
Putative membrane protein.
       0.541
PECL_680
Hypothetical protein.
       0.541
Your Current Organism:
Pediococcus claussenii
NCBI taxonomy Id: 701521
Other names: P. claussenii ATCC BAA-344, Pediococcus claussenii ATCC BAA-344, Pediococcus claussenii ATCC str. BAA-344, Pediococcus claussenii ATCC strain BAA-344
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