STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PECL_71Substrate binding domain of ABC-type glycine betaine transport system family protein. (509 aa)    
Predicted Functional Partners:
PECL_72
ABC transporter family protein.
 0.999
opuCA
Glycine betaine/carnitine/choline ABC transporter, ATP-binding protein OpuCA.
 0.996
opuCC
Glycine betaine/carnitine/choline ABC transporter, substrate-binding protein OpuCC.
 
 
0.962
opuCB
Glycine betaine/carnitine/choline ABC transporter, permease protein OpuCB.
 
 
0.961
opuCD
Glycine betaine/carnitine/choline ABC transporter, permease protein OpuCD.
 
 
0.959
PECL_73
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
 0.825
PECL_70
Iron dependent repressor, marR family.
  
  
 0.652
PECL_400
Glutamine ABC transporter, permease/substrate-binding protein.
     
 0.549
PECL_857
Amino acid ABC transporter, permease/substrate-binding protein.
     
 0.549
PECL_211
Iron dependent repressor, N-terminal DNA binding domain protein.
 
  
 0.518
Your Current Organism:
Pediococcus claussenii
NCBI taxonomy Id: 701521
Other names: P. claussenii ATCC BAA-344, Pediococcus claussenii ATCC BAA-344, Pediococcus claussenii ATCC str. BAA-344, Pediococcus claussenii ATCC strain BAA-344
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.