Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
kduD2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01832. (253 aa)    
Predicted Functional Partners:
kduI
5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
 0.992
CUW_0772
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
 
 0.952
CUW_0777
D-galactarate dehydratase/altronate hydrolase, C-terminal domain protein; Identified by match to protein family HMM PF04295; match to protein family HMM PF08666.
    
 0.941
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00215; match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.820
rpiB
Ribose-5-phosphate isomerase B; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120.
    
 0.812
rpiB-2
Ribose-5-phosphate isomerase B; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120.
    
 0.812
rpiA
Ribose 5-phosphate isomerase A; Identified by match to protein family HMM PF00455; match to protein family HMM PF06026; match to protein family HMM TIGR00021.
     
 0.803
eda
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
 
  
 0.771
CUW_1568
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.751
CUW_0775
Transcriptional regulator, IclR family, C-terminal domain protein; Identified by match to protein family HMM PF01614; match to protein family HMM PF09339.
 
   
 0.641
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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