Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUW_0902LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF05738; match to protein family HMM TIGR01167. (1099 aa)    
Predicted Functional Partners:
CUW_0900
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.869
CUW_0899
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.840
CUW_0901
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167.
 
    
0.808
CUW_2537
Sortase family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.626
CUW_0543
Hypothetical protein; Identified by glimmer; putative.
  
     0.495
CUW_2288
Putative 4-hydroxybenzoate polyprenyltransferase; Identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; Belongs to the UbiA prenyltransferase family.
  
  
 0.464
CUW_1955
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
 
   
 0.462
CUW_1628
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF00404; match to protein family HMM PF00754.
  
  
 0.441
CUW_1252
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
  
 0.435
CUW_1568
Hypothetical protein; Identified by glimmer; putative.
     
 0.435
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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