STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUW_0962AP endonuclease, family 2; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01261. (268 aa)    
Predicted Functional Partners:
CUW_0961
Putative guanine deaminase; Identified by match to protein family HMM PF00383.
     
 0.701
CUW_2054
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
 0.592
CUW_2574
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
  
  
 0.592
CUW_2585
Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408.
  
  
 0.592
CUW_2447
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
 
  
 0.548
CUW_0096
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.459
CUW_0772
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.459
rbsK
Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.459
CUW_1210
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
  
 0.459
CUW_2753
Kinase, PfkB family; Identified by match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.459
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.