STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptsGPTS system, glucose-specific IIBC component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02002. (522 aa)    
Predicted Functional Partners:
ptbA
PTS system, glucose subfamily, IIA component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830.
 0.999
CUW_2166
Glycosyl hydrolase family 20, domain 2; Identified by match to protein family HMM PF00728; match to protein family HMM PF02838.
  
  
 0.999
CUW_0953
Putative PTS system, sucrose-specific, EIIBCA component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00358; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995.
 
 0.998
CUW_1725
Phosphocarrier, HPr family; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 0.984
CUW_0952
Phosphotransferase system, EIIB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00367.
  
 
 0.982
CUW_2319
Putative PTS system glucose-specific EIICBA component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02378.
 
0.982
CUW_1073
Putative glucokinase; Identified by match to protein family HMM PF00480.
  
 0.979
glk
Glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.
  
 0.979
CUW_2169
Putative glucokinase; Identified by match to protein family HMM PF00480.
  
 0.979
CUW_2632
Putative glucokinase; Identified by match to protein family HMM PF00480.
  
 0.979
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.