STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUW_1908Septum formation initiator; Identified by match to protein family HMM PF04977. (116 aa)    
Predicted Functional Partners:
ftsQ
POTRA domain protein, FtsQ-type; Essential cell division protein.
 
 
 0.987
yabP
Sporulation protein YabP; Identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892.
  
  
 0.820
CUW_1907
Putative spore cortex biosynthesis protein YabQ.
       0.773
CUW_1121
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 0.754
CUW_1667
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223.
 
 0.750
CUW_1909
S1 RNA binding domain protein; Identified by match to protein family HMM PF00575.
 
    0.735
CUW_1711
Conserved domain protein.
  
     0.711
CUW_2787
Adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.698
CUW_1542
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.667
CUW_2153
Conserved hypothetical protein; Identified by match to protein family HMM PF07050; Belongs to the UPF0342 family.
  
     0.654
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.