Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
asrASulfite reductase, subunit A; Identified by match to protein family HMM TIGR02910. (337 aa)    
Predicted Functional Partners:
asrB
Sulfite reductase, subunit B; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02911.
 
 0.999
asrC
Sulfite reductase, subunit C; Identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.995
CUW_2852
Putative flagellar protein FliS; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992.
  
 
 0.918
cysK
Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.912
CUW_2704
Nitrite/sulfite reductase ferredoxin domain protein; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460.
   
 
  0.903
CUW_1787
Conserved hypothetical protein; Identified by match to protein family HMM PF06555.
  
 
 0.755
CUW_1962
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00325.
 
   
 0.660
CUW_2798
Putative CoA-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992; Belongs to the sulfur carrier protein TusA family.
  
 
 0.610
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
     
 0.573
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.539
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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