Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
narCNitrate reductase, NADH oxidase subunit; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. (411 aa)    
Predicted Functional Partners:
narA
Nitrate reductase, catalytic subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00384; match to protein family HMM PF01568; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.991
CUW_1967
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
 
 
 
 0.978
CUW_1969
C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.
 
     0.730
CUW_2551
Globin; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00042; Belongs to the globin family.
  
  
 0.708
cobA
uroporphyrinogen-III C-methyltransferase; Identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469.
  
  
 0.668
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.654
CUW_1103
Putative type A flavoprotein; Identified by match to protein family HMM PF00258; match to protein family HMM PF00753.
 
  
 0.631
GltB
Class II glutamine amidotransferase; Identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
  
  
 0.606
CUW_1970
C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.
 
     0.557
CUW_2805
Rubredoxin; Identified by match to protein family HMM PF00070; match to protein family HMM PF00258; match to protein family HMM PF00301; match to protein family HMM PF00753; match to protein family HMM PF07992.
 
  
0.555
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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