Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUW_2005Conserved hypothetical protein. (244 aa)    
Predicted Functional Partners:
CUW_0008
Conserved hypothetical protein.
 
    0.761
CUW_0888
Spore germination protein (amino acid permease); Identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912.
  
     0.688
CUW_0889
Germination protein, Ger(X)C family; Identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887.
  
     0.613
CUW_2004
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.545
CUW_0866
Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF05504.
  
     0.516
CUW_0838
Putative lipoprotein.
  
     0.487
CUW_2003
Hypothetical protein; Identified by glimmer; putative.
       0.484
CUW_2264
Conserved hypothetical protein.
     0.404
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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