STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUW_2117Conserved hypothetical protein; Belongs to the UPF0342 family. (116 aa)    
Predicted Functional Partners:
CUW_2153
Conserved hypothetical protein; Identified by match to protein family HMM PF07050; Belongs to the UPF0342 family.
    
 
 0.795
miaB
tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.794
CotE
Conserved hypothetical protein.
       0.515
spoVS
Stage V sporulation protein S; Identified by match to protein family HMM PF04232.
       0.498
rny
Conserved hypothetical protein YmdA/YtgF; Endoribonuclease that initiates mRNA decay.
     
 0.490
CUW_2114
Putative metallophosphoesterase; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282.
       0.408
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.