Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
CUW_2162ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (336 aa)    
Predicted Functional Partners:
CUW_2161
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.988
CUW_2167
Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.
 
 0.978
CUW_2160
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00165.
 
  
 0.855
UgpC
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
 
 0.822
CUW_2159
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518; match to protein family HMM PF06580.
 
     0.809
CUW_2035
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.804
CUW_2164
Glycosyl hydrolase family 38 N-terminal domain protein; Identified by match to protein family HMM PF01074; match to protein family HMM PF07748.
 
   
 0.777
CUW_0673
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.776
CUW_0423
ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528.
 
 
 0.768
CUW_0119
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.764
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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