Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
CUW_2437Putative aconitate hydratase; Identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01342. (639 aa)    
Predicted Functional Partners:
CUW_2438
Isocitrate dehydrogenase, NAD-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00175.
 
 0.987
CUW_2436
Identified by match to protein family HMM PF00682.
 
 0.958
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 0.882
sodA
Superoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.829
rpmF
Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.
   
 0.826
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.822
CUW_1495
Identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481.
   
 
 0.800
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
 
 0.795
rpmA
Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.793
rplQ
Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.
   
 
 0.790
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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