Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
Databases
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[Homology]
Score
CUW_2467Bacterial extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496. (651 aa)    
Predicted Functional Partners:
CUW_2468
Putative oligopeptide ABC transporter, permease protein AppB; Identified by match to protein family HMM PF00528.
 0.988
CUW_2471
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
 
 0.981
CUW_2711
Putative glutathione ABC transporter, permease protein GsiC; Identified by match to protein family HMM PF00528.
 0.981
CUW_2469
Putative oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.
 
 
 0.978
oppD
Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.977
CUW_2714
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
 
 0.971
CUW_2712
Putative oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.
 
 0.970
CUW_2713
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02463; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.962
CUW_0072
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; Belongs to the ABC transporter superfamily.
 
 0.953
CUW_0071
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.948
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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