Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EFR88175.1RNA-binding domain-containing protein; Belongs to the CvfB family. (290 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
      
 0.582
cutC-2
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.554
EFR86665.1
Conserved hypothetical protein; Identified by match to protein family HMM PF09148.
   
    0.527
EFR88179.1
TrkA domain-containing protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
       0.513
EFR87602.1
YtwI; Identified by match to protein family HMM PF04284.
  
    0.498
EFR88176.1
Conserved hypothetical protein.
       0.496
EFR88177.1
Sensor protein LiaS; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
       0.496
EFR88178.1
Sensory transduction protein LiaR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281.
       0.496
EFR87601.1
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
  
    0.413
cinA
Putative competence-damage inducible protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
       0.405
Your Current Organism:
Listeria marthii
NCBI taxonomy Id: 702457
Other names: L. marthii FSL S4-120, Listeria marthii FSL S4-120
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