STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR87065.1Putative heme peroxidase; Identified by match to protein family HMM PF06778. (147 aa)    
Predicted Functional Partners:
EFR86969.1
Ferrochelatase; Identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; Belongs to the ferrochelatase family.
 
 
 0.970
EFR87074.1
Putative heme peroxidase; Identified by match to protein family HMM PF06778.
     0.964
EFR88318.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.855
isdG
Heme-degrading monooxygenase IsdG; Allows bacterial pathogens to use the host heme as an iron source. Catalyzes the oxidative degradation of the heme macrocyclic porphyrin ring to the biliverdin in the presence of a suitable electron donor such as ascorbate or NADPH--cytochrome P450 reductase, with subsequent release of free iron; Belongs to the antibiotic biosynthesis monooxygenase family. Heme-degrading monooxygenase IsdG subfamily.
  
  
 0.820
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
  
  
  0.816
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 1 subfamily.
 
 
  0.666
EFR87520.1
Protein CcdC; Identified by match to protein family HMM PF07301.
  
     0.552
EFR87073.1
DNA-binding protein, putative.
  
    0.474
EFR87066.1
Bacitracin export ATP-binding protein BceA; Identified by match to protein family HMM PF00005.
       0.445
EFR86962.1
Antibiotic biosynthesis monooxygenase subfamily; Identified by match to protein family HMM PF03992.
     
 0.434
Your Current Organism:
Listeria marthii
NCBI taxonomy Id: 702457
Other names: L. marthii FSL S4-120, Listeria marthii FSL S4-120
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