STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR86460.1Guanine-specific ribonuclease N1 and T1; Identified by match to protein family HMM PF00545. (437 aa)    
Predicted Functional Partners:
EFR86459.1
Barstar; Identified by match to protein family HMM PF01337.
  
 
 0.978
EFR86347.1
Identified by match to protein family HMM PF09479; match to protein family HMM TIGR02543.
  
     0.511
EFR86458.1
ABC transporter, ATP-binding/permease protein.
       0.501
EFR88802.1
Conserved hypothetical protein.
  
     0.479
Your Current Organism:
Listeria marthii
NCBI taxonomy Id: 702457
Other names: L. marthii FSL S4-120, Listeria marthii FSL S4-120
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