J9K659_ACYPI protein (Acyrthosiphon pisum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J9K659_ACYPI

Uncharacterized protein. (435 aa)

Predicted Functional Partners:

ACYPI000645

0.999

J9JM85_ACYPI

0.999

J9JMM0_ACYPI

0.999

J9JTI6_ACYPI

0.999

J9K118_ACYPI

0.999

ACYPI008325

0.997

ACYPI009132

0.997

Rps3

0.997

Rps12

0.997

J9JX20_ACYPI

0.995

Your Current Organism:

Acyrthosiphon pisum

NCBI taxonomy Id: 7029
Other names: A. pisum, Acyrthosiphum pisum, pea aphid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACYPI000645	ACYPI008325	C4WUK1	C4WSI2	ACYPI000645 protein.	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	0.988
ACYPI000645	ACYPI009132	C4WUK1	C4WYG5	ACYPI000645 protein.	ACYPI009132 protein.	0.974
ACYPI000645	J9JM85_ACYPI	C4WUK1	J9JM85	ACYPI000645 protein.	Uncharacterized protein.	0.999
ACYPI000645	J9JMM0_ACYPI	C4WUK1	J9JMM0	ACYPI000645 protein.	Bms1-type G domain-containing protein.	0.999
ACYPI000645	J9JTI6_ACYPI	C4WUK1	J9JTI6	ACYPI000645 protein.	RIO domain-containing protein.	0.999
ACYPI000645	J9JX20_ACYPI	C4WUK1	J9JX20	ACYPI000645 protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.941
ACYPI000645	J9K118_ACYPI	C4WUK1	J9K118	ACYPI000645 protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.997
ACYPI000645	J9K659_ACYPI	C4WUK1	J9K659	ACYPI000645 protein.	Uncharacterized protein.	0.999
ACYPI000645	Rps12	C4WUK1	Q201W7	ACYPI000645 protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.961
ACYPI000645	Rps3	C4WUK1	J9JZQ5	ACYPI000645 protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.981
ACYPI008325	ACYPI000645	C4WSI2	C4WUK1	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	ACYPI000645 protein.	0.988
ACYPI008325	ACYPI009132	C4WSI2	C4WYG5	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	ACYPI009132 protein.	0.999
ACYPI008325	J9JM85_ACYPI	C4WSI2	J9JM85	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.997
ACYPI008325	J9JMM0_ACYPI	C4WSI2	J9JMM0	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	Bms1-type G domain-containing protein.	0.987
ACYPI008325	J9JTI6_ACYPI	C4WSI2	J9JTI6	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	RIO domain-containing protein.	0.997
ACYPI008325	J9K118_ACYPI	C4WSI2	J9K118	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.989
ACYPI008325	J9K659_ACYPI	C4WSI2	J9K659	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.997
ACYPI008325	Rps12	C4WSI2	Q201W7	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
ACYPI008325	Rps3	C4WSI2	J9JZQ5	ACYPI008325 protein; Belongs to the universal ribosomal protein uS5 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
ACYPI009132	ACYPI000645	C4WYG5	C4WUK1	ACYPI009132 protein.	ACYPI000645 protein.	0.974