X1WVG6_ACYPI protein (Acyrthosiphon pisum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X1WVG6_ACYPI

Lactamase_B domain-containing protein. (617 aa)

Predicted Functional Partners:

J9JSU0_ACYPI

0.868

J9K495_ACYPI

0.827

X1WZS2_ACYPI

0.815

ACYPI004127

0.804

ACYPI007336

0.790

ACYPI001508

0.784

J9JKT0_ACYPI

0.784

J9JU83_ACYPI

0.776

J9K933_ACYPI

0.776

ACYPI001769

0.773

Your Current Organism:

Acyrthosiphon pisum

NCBI taxonomy Id: 7029
Other names: A. pisum, Acyrthosiphum pisum, pea aphid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACYPI001508	ACYPI001769	C4WVH2	C4WTK3	ACYPI001508 protein.	ACYPI001769 protein.	0.975
ACYPI001508	ACYPI004127	C4WVH2	C4WS93	ACYPI001508 protein.	ACYPI004127 protein.	0.996
ACYPI001508	ACYPI007336	C4WVH2	C4WV71	ACYPI001508 protein.	ACYPI007336 protein; Belongs to the bacterial ribosomal protein bL20 family.	0.996
ACYPI001508	J9JKT0_ACYPI	C4WVH2	J9JKT0	ACYPI001508 protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.971
ACYPI001508	J9JSU0_ACYPI	C4WVH2	J9JSU0	ACYPI001508 protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.967
ACYPI001508	J9JU83_ACYPI	C4WVH2	J9JU83	ACYPI001508 protein.	Uncharacterized protein.	0.978
ACYPI001508	J9K495_ACYPI	C4WVH2	J9K495	ACYPI001508 protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.996
ACYPI001508	J9K933_ACYPI	C4WVH2	J9K933	ACYPI001508 protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.978
ACYPI001508	X1WVG6_ACYPI	C4WVH2	X1WVG6	ACYPI001508 protein.	Lactamase_B domain-containing protein.	0.784
ACYPI001508	X1WZS2_ACYPI	C4WVH2	X1WZS2	ACYPI001508 protein.	RPOLA_N domain-containing protein; Belongs to the RNA polymerase beta chain family.	0.882
ACYPI001769	ACYPI001508	C4WTK3	C4WVH2	ACYPI001769 protein.	ACYPI001508 protein.	0.975
ACYPI001769	ACYPI004127	C4WTK3	C4WS93	ACYPI001769 protein.	ACYPI004127 protein.	0.983
ACYPI001769	ACYPI007336	C4WTK3	C4WV71	ACYPI001769 protein.	ACYPI007336 protein; Belongs to the bacterial ribosomal protein bL20 family.	0.976
ACYPI001769	J9JKT0_ACYPI	C4WTK3	J9JKT0	ACYPI001769 protein.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.975
ACYPI001769	J9JSU0_ACYPI	C4WTK3	J9JSU0	ACYPI001769 protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.967
ACYPI001769	J9JU83_ACYPI	C4WTK3	J9JU83	ACYPI001769 protein.	Uncharacterized protein.	0.961
ACYPI001769	J9K495_ACYPI	C4WTK3	J9K495	ACYPI001769 protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.984
ACYPI001769	J9K933_ACYPI	C4WTK3	J9K933	ACYPI001769 protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.961
ACYPI001769	X1WVG6_ACYPI	C4WTK3	X1WVG6	ACYPI001769 protein.	Lactamase_B domain-containing protein.	0.773
ACYPI001769	X1WZS2_ACYPI	C4WTK3	X1WZS2	ACYPI001769 protein.	RPOLA_N domain-containing protein; Belongs to the RNA polymerase beta chain family.	0.993