STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfgLLipoprotein yfgL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (394 aa)    
Predicted Functional Partners:
SBT60143.1
Uncharacterized protein conserved in bacteria.
    0.976
yaeT
Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.
 
 
 0.948
yfiO
Outer membrane biogenesis protein BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamA, the core component of the assembly machinery.
 
 
 0.903
surA
Peptidyl-prolyl cis-trans isomerase surA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
  
 
 0.878
rssA_1
NTE family protein rssA.
  
 
 0.833
smpA
Small protein A precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.833
SBT62404.1
Outer membrane protein/protective antigen OMA87.
  
 
 0.823
nlpB
Lipoprotein 34 precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.821
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
 0.818
hisS_1
Histidine--tRNA ligase.
  
    0.744
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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