STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zraR_1Transcriptional regulatory protein ZraR. (513 aa)    
Predicted Functional Partners:
SBT59926.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.837
SBT60302.1
Uncharacterized protein conserved in bacteria.
 
   
 0.819
SBT60301.1
Type VI secretion-associated protein, VC_A0118 family.
     
 0.800
SBT60298.1
Uncharacterized protein conserved in bacteria.
     
 0.798
clpV1
Protein disaggregation chaperone; Belongs to the ClpA/ClpB family.
       0.798
SBT60295.1
Uncharacterized conserved protein, contains FHA domain.
     
 0.794
SBT60292.1
Type VI secretion system lysozyme-like protein.
     
 0.767
SBT60296.1
Uncharacterized protein conserved in bacteria.
     
 0.751
SBT60291.1
Uncharacterized protein conserved in bacteria.
       0.750
SBT60293.1
Uncharacterized protein conserved in bacteria.
       0.750
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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