STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT60558.1Uncharacterised protein. (403 aa)    
Predicted Functional Partners:
SBT60559.1
Uncharacterised protein.
       0.799
SBT60560.1
Putative glucosyl-3-phosphoglycerate synthase.
       0.773
ptk
Tyrosine-protein kinase ptk.
       0.626
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
       0.569
SBT60555.1
Uncharacterized protein conserved in bacteria.
       0.564
mgtA_2
GDP-mannose-dependent alpha-mannosyltransferase.
       0.537
kpsD
Polysialic acid transport protein kpsD precursor.
       0.533
SBT60562.1
Glycogen synthase.
       0.449
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.