STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgG_1Phage resistance protein. (506 aa)    
Predicted Functional Partners:
cph2_4
Bacteriophytochrome cph2.
 
 0.985
ydaM_2
Probable diguanylate cyclase YdaM.
 
    0.977
cph2_1
Bacteriophytochrome cph2.
 
 
 
 0.971
pleD_3
Stalked cell differentiation-controlling protein.
 
 
 
 0.968
adrA
Probable diguanylate cyclase AdrA.
  
 0.929
pleD_2
Stalked cell differentiation-controlling protein.
 
    0.880
pleD_4
Stalked cell differentiation-controlling protein.
 
    0.858
pleD_1
Stalked cell differentiation-controlling protein.
 
    0.838
ydaM_3
Probable diguanylate cyclase YdaM.
 
    0.835
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.830
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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