STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT62311.1Glycogen synthase. (410 aa)    
Predicted Functional Partners:
mshA
D-inositol-3-phosphate glycosyltransferase.
 
     0.945
rfaL
O-antigen ligase.
 
  
 0.924
kfoC
Chondroitin polymerase.
 
  
 0.871
rfaF
ADP-heptose--LPS heptosyltransferase 2.
  
  
 0.808
rfaC
Lipopolysaccharide heptosyltransferase 1.
  
  
 0.800
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.746
xerD_2
Tyrosine recombinase XerD.
  
     0.720
frsA
Fermentation/respiration switch protein; Belongs to the UPF0255 family.
   
 
 0.685
pimC
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol dimannoside mannosyltransferase.
  
     0.676
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
  
  
 0.653
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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