STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBT62312.1Uncharacterised protein. (319 aa)    
Predicted Functional Partners:
pimC
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol dimannoside mannosyltransferase.
 
     0.872
rfaG
Lipopolysaccharide core biosynthesis protein rfaG.
 
     0.854
frsA
Fermentation/respiration switch protein; Belongs to the UPF0255 family.
 
 
 
 0.726
rfaL
O-antigen ligase.
 
  
 0.712
rfaQ
Lipopolysaccharide core heptosyltransferase rfaQ.
 
  
 0.657
wcaJ_2
Putative colanic biosynthesis UDP-glucose lipid carrier transferase.
  
  
 0.653
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.639
wzxE
O-antigen translocase.
 
  
 0.570
SBT60208.1
NlpC/P60 family.
  
     0.548
aaeB
P-hydroxybenzoic acid efflux pump subunit AaeB.
  
     0.507
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.