gene:203531663 protein (Kibdelosporangium sp. MJ126NF4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gene:203531663

annotation not available (282 aa)

Predicted Functional Partners:

gene:203532021

0.862

CEL22364.1

0.862

gene:203532027

0.832

CEL22362.1

0.832

gene:203532025

0.818

gene:203532325

0.818

CEL15047.1

0.817

gene:203532023

0.817

CEL21850.1

0.817

CEL22354.1

0.817

Your Current Organism:

Kibdelosporangium sp. MJ126NF4

NCBI taxonomy Id: 703222
Other names: K. sp. MJ126-NF4, Kibdelosporangium sp. MJ126-NF4

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEL15047.1	CEL21850.1	gene:203532022	gene:203538880	NADH-ubiquinone oxidoreductase chain D.	NAD-dependent formate dehydrogenase gamma subunit.	0.989
CEL15047.1	CEL22362.1	gene:203532022	gene:203539392	NADH-ubiquinone oxidoreductase chain D.	NADH-ubiquinone oxidoreductase chain I.	0.996
CEL15047.1	CEL22364.1	gene:203532022	gene:203539394	NADH-ubiquinone oxidoreductase chain D.	NADH-ubiquinone oxidoreductase chain C.	0.996
CEL15047.1	gene:203531663	gene:203532022	gene:203531663	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.817
CEL15047.1	gene:203532021	gene:203532022	gene:203532021	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.999
CEL15047.1	gene:203532023	gene:203532022	gene:203532023	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.998
CEL15047.1	gene:203532025	gene:203532022	gene:203532025	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.999
CEL15047.1	gene:203532027	gene:203532022	gene:203532027	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.998
CEL15047.1	gene:203532325	gene:203532022	gene:203532325	NADH-ubiquinone oxidoreductase chain D.	annotation not available	0.984
CEL21850.1	CEL15047.1	gene:203538880	gene:203532022	NAD-dependent formate dehydrogenase gamma subunit.	NADH-ubiquinone oxidoreductase chain D.	0.989
CEL21850.1	CEL22354.1	gene:203538880	gene:203539384	NAD-dependent formate dehydrogenase gamma subunit.	NADH-ubiquinone oxidoreductase chain D.	0.987
CEL21850.1	CEL22362.1	gene:203538880	gene:203539392	NAD-dependent formate dehydrogenase gamma subunit.	NADH-ubiquinone oxidoreductase chain I.	0.985
CEL21850.1	CEL22364.1	gene:203538880	gene:203539394	NAD-dependent formate dehydrogenase gamma subunit.	NADH-ubiquinone oxidoreductase chain C.	0.986
CEL21850.1	gene:203531663	gene:203538880	gene:203531663	NAD-dependent formate dehydrogenase gamma subunit.	annotation not available	0.817
CEL21850.1	gene:203532021	gene:203538880	gene:203532021	NAD-dependent formate dehydrogenase gamma subunit.	annotation not available	0.992
CEL21850.1	gene:203532025	gene:203538880	gene:203532025	NAD-dependent formate dehydrogenase gamma subunit.	annotation not available	0.997
CEL21850.1	gene:203532027	gene:203538880	gene:203532027	NAD-dependent formate dehydrogenase gamma subunit.	annotation not available	0.991
CEL21850.1	gene:203532325	gene:203538880	gene:203532325	NAD-dependent formate dehydrogenase gamma subunit.	annotation not available	0.984
CEL22354.1	CEL21850.1	gene:203539384	gene:203538880	NADH-ubiquinone oxidoreductase chain D.	NAD-dependent formate dehydrogenase gamma subunit.	0.987
CEL22354.1	CEL22362.1	gene:203539384	gene:203539392	NADH-ubiquinone oxidoreductase chain D.	NADH-ubiquinone oxidoreductase chain I.	0.997