der protein (Acinetobacter variabilis) - STRING interaction network

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der

GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (470 aa)

Predicted Functional Partners:

cmk

0.979

gpsA

0.954

dnaG

0.866

F897_01244

0.812

ndk

0.807

F897_00072

0.787

hisS

0.752

rlmN

0.748

bamB

0.742

F897_03095

0.728

Your Current Organism:

Acinetobacter variabilis

NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F897_00072	bamB	F897_00072	F897_00071	TPR_21 domain-containing protein.	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.975
F897_00072	der	F897_00072	F897_00070	TPR_21 domain-containing protein.	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.787
F897_00072	hisS	F897_00072	F897_00073	TPR_21 domain-containing protein.	Histidine--tRNA ligase.	0.942
F897_00072	ndk	F897_00072	F897_00078	TPR_21 domain-containing protein.	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.682
F897_00072	rlmN	F897_00072	F897_00077	TPR_21 domain-containing protein.	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.780
F897_01244	cmk	F897_01244	F897_02411	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	Cytidylate kinase.	0.725
F897_01244	der	F897_01244	F897_00070	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.812
F897_01244	rlmN	F897_01244	F897_00077	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.422
F897_03095	der	F897_03095	F897_00070	GTP-binding protein TypA/BipA.	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.728
bamB	F897_00072	F897_00071	F897_00072	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	TPR_21 domain-containing protein.	0.975
bamB	der	F897_00071	F897_00070	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.742
bamB	hisS	F897_00071	F897_00073	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Histidine--tRNA ligase.	0.872
bamB	ndk	F897_00071	F897_00078	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.680
bamB	rlmN	F897_00071	F897_00077	Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Dual-specificity RNA methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.	0.777
cmk	F897_01244	F897_02411	F897_01244	Cytidylate kinase.	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	0.725
cmk	der	F897_02411	F897_00070	Cytidylate kinase.	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.979
cmk	ndk	F897_02411	F897_00078	Cytidylate kinase.	Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.	0.962
der	F897_00072	F897_00070	F897_00072	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	TPR_21 domain-containing protein.	0.787
der	F897_01244	F897_00070	F897_01244	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	0.812
der	F897_03095	F897_00070	F897_03095	GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	GTP-binding protein TypA/BipA.	0.728

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