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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_00128Uncharacterized protein. (750 aa)    
Predicted Functional Partners:
F897_00129
PKHD-type hydroxylase F897_00129.
 
  
 0.979
F897_01794
Carrier domain-containing protein.
   
  
 0.806
F897_02981
Uncharacterized protein.
 
  
 0.696
F897_02145
Uncharacterized protein.
 
   
 0.676
F897_00165
TonB-dependent receptor.
 
  
 0.605
F897_01584
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
  
 0.563
F897_00164
MotA/TolQ/ExbB proton channel family protein.
  
 
  0.540
F897_03293
Uncharacterized protein.
 
  
 0.533
F897_00043
Uncharacterized protein.
  
  
 0.511
F897_01232
Biopolymer transporter ExbD.
  
 
  0.481
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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