Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F897_00625 | F897_00626 | F897_00625 | F897_00626 | HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. | Uncharacterized protein. | 0.584 |
F897_00625 | ppc | F897_00625 | F897_00627 | HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. | 0.402 |
F897_00626 | F897_00625 | F897_00626 | F897_00625 | Uncharacterized protein. | HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. | 0.584 |
F897_00626 | F897_01721 | F897_00626 | F897_01721 | Uncharacterized protein. | Uncharacterized protein. | 0.615 |
F897_00626 | carA | F897_00626 | F897_02888 | Uncharacterized protein. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.599 |
F897_00626 | carB | F897_00626 | F897_02889 | Uncharacterized protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.596 |
F897_00626 | ppc | F897_00626 | F897_00627 | Uncharacterized protein. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. | 0.486 |
F897_00626 | purL | F897_00626 | F897_02781 | Uncharacterized protein. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.614 |
F897_00626 | pyrB | F897_00626 | F897_01720 | Uncharacterized protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.672 |
F897_00626 | pyrD | F897_00626 | F897_01755 | Uncharacterized protein. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.452 |
F897_00626 | pyrE | F897_00626 | F897_00447 | Uncharacterized protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.604 |
F897_00626 | pyrF | F897_00626 | F897_02407 | Uncharacterized protein. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.610 |
F897_01721 | F897_00626 | F897_01721 | F897_00626 | Uncharacterized protein. | Uncharacterized protein. | 0.615 |
F897_01721 | carA | F897_01721 | F897_02888 | Uncharacterized protein. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.999 |
F897_01721 | carB | F897_01721 | F897_02889 | Uncharacterized protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
F897_01721 | purL | F897_01721 | F897_02781 | Uncharacterized protein. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.502 |
F897_01721 | pyrB | F897_01721 | F897_01720 | Uncharacterized protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
F897_01721 | pyrD | F897_01721 | F897_01755 | Uncharacterized protein. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.991 |
F897_01721 | pyrE | F897_01721 | F897_00447 | Uncharacterized protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.931 |
F897_01721 | pyrF | F897_01721 | F897_02407 | Uncharacterized protein. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.930 |
page 1 of 4