Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F897_00674Uncharacterized protein. (510 aa)    
Predicted Functional Partners:
F897_00675
AAA domain-containing protein.
 
 
   0.991
F897_00677
Uncharacterized protein.
 
   
 0.951
F897_00676
Integrase catalytic domain-containing protein.
 
     0.946
F897_00673
TnsE_C domain-containing protein.
     
 0.817
F897_01505
Uncharacterized protein.
  
     0.718
F897_00051
Uncharacterized protein.
  
     0.669
F897_01296
Acyl_transf_3 domain-containing protein.
  
     0.644
F897_00813
Uncharacterized protein.
  
     0.550
F897_01507
Uncharacterized protein.
  
     0.492
F897_01506
HTH luxR-type domain-containing protein.
  
     0.437
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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