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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_01210Phenylacetate-CoA oxygenase, PaaJ subunit. (166 aa)    
Predicted Functional Partners:
F897_01207
Phenylacetic acid degradation protein paaA.
 
 
 0.998
F897_01208
Phenylacetic acid degradation protein paaB.
 
 
 0.998
F897_01209
Phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.998
F897_01211
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 
 0.998
F897_02574
Phenylacetic acid degradation protein PaaD.
 
 
 0.981
F897_01214
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.970
F897_01212
Uncharacterized protein.
 
 
 0.941
F897_01206
Phenylacetic acid degradation protein paaN.
 
  
 0.940
F897_02122
Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.886
iscU
Iron-sulfur cluster assembly scaffold protein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
    0.781
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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