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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_01691HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
F897_02076
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.752
F897_01444
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.714
F897_03416
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.714
F897_03034
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.696
F897_00203
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.695
F897_00625
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.672
F897_02761
CysB family HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.646
F897_01690
LysM domain-containing protein.
       0.577
surE
5'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.460
F897_00920
Glutamine amidotransferase type-2 domain-containing protein.
     
 0.435
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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