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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_02053Urea ABC transporter, permease UrtC; Belongs to the binding-protein-dependent transport system permease family. (357 aa)    
Predicted Functional Partners:
urtA
Urea ABC transporter substrate-binding protein.
 
 
 0.999
F897_02052
Urea ABC transporter, permease UrtB; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
F897_02054
Urea ABC transporter, ATP-binding protein UrtD.
 
 0.999
F897_02055
Urea ABC transporter, ATP-binding protein UrtE.
 
 0.999
F897_00055
Histidine kinase domain-containing protein.
     
 0.669
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.613
ureE
Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.602
F897_02722
ABC transporter ATP-binding protein.
   
  0.542
F897_00920
Glutamine amidotransferase type-2 domain-containing protein.
     
 0.480
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.474
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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