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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_02176HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
F897_02178
Muconolactone Delta-isomerase; Belongs to the muconolactone Delta-isomerase family.
 
   
 0.926
F897_02177
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.917
F897_02179
Catechol 1,2-dioxygenase.
 
   
 0.894
F897_02182
Benzoate 1,2-dioxygenase electron transfer component.
 
   
 0.772
F897_02181
Benzoate 1,2-dioxygenase subunit beta.
 
   
 0.746
F897_02183
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.744
F897_02180
Benzoate 1,2-dioxygenase subunit alpha.
 
   
 0.728
F897_02174
MFS domain-containing protein.
 
   
 0.712
F897_02858
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.695
F897_03321
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.624
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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