Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F897_02473Uncharacterized protein; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
 
 
 0.721
F897_02472
Uncharacterized protein.
       0.647
F897_00112
Uncharacterized protein; Belongs to the 'phage' integrase family.
  
     0.481
F897_03354
Uncharacterized protein; Belongs to the 'phage' integrase family.
  
     0.469
F897_03254
Uncharacterized protein; Belongs to the 'phage' integrase family.
  
     0.445
F897_02651
Phage_integrase domain-containing protein; Belongs to the 'phage' integrase family.
  
     0.440
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
  
 
   0.429
F897_01000
Pribosyltran domain-containing protein.
   
    0.425
F897_01274
FtsK domain-containing protein.
  
   
 0.413
F897_02474
Uncharacterized protein.
       0.406
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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