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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_02870Efflux pump membrane transporter. (1031 aa)    
Predicted Functional Partners:
F897_02949
HlyD_D23 domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.993
adeK
Multidrug efflux RND transporter AdeIJK outer membrane channel subunit AdeK.
 
 0.993
F897_03189
HlyD_D23 domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.913
F897_02950
Efflux pump membrane transporter.
  
  
 
0.904
F897_00091
Uncharacterized protein.
 
 0.881
F897_03004
HlyD_D23 domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.862
F897_00089
Biotin_lipoyl_2 domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.827
F897_00629
HlyD_D23 domain-containing protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.821
F897_00853
Uncharacterized protein.
  
 0.782
F897_00851
Uncharacterized protein.
   
 0.751
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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