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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_03221CopD domain-containing protein. (293 aa)    
Predicted Functional Partners:
F897_03222
CopC domain-containing protein.
 
  
 0.961
F897_01167
Uncharacterized protein.
  
     0.701
F897_00044
Uncharacterized protein.
  
     0.685
F897_01642
Uncharacterized protein.
  
     0.667
F897_00753
Uncharacterized protein.
  
     0.656
F897_00269
Uncharacterized protein.
  
     0.637
F897_01264
Uncharacterized protein.
 
   
 0.628
F897_01684
DUF1543 domain-containing protein.
  
     0.615
F897_01530
Uncharacterized protein.
  
     0.602
F897_00216
Uncharacterized protein.
  
     0.588
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.